PeptideShaker and SearchGUI in Galaxy

Contribute to project development by filing a bug or submitting a pull request on GitHub

Install on the Galaxy toolshed

Together, SearchGUI and PeptideShaker form a free, cross platform, open source pipeline for peptide and protein identification including some downstream analysis. This page describes efforts by the Galaxy proteomics community to bring the power of these two applications to Galaxy.

The benefits of using SearchGUI and PeptideShaker from within Galaxy include;


PeptideShaker and Galaxy are at GCC 2015. Click the links below for course materials

A slightly older tutorial on using PeptideShaker in Galaxy is available here