This page provides links to instructional materials describing how to access and use the proteogenomic workflows described in the manuscript text.
This site is under maintenance
In case of job failures on this server, all the workflows and tutorials below can be tested on the Galaxy European server
Please access the links indicated below for the following materials:
Training Resources
- Mouse Protegenomics tutorial: http://z.umn.edu/pginnov18
- Proteogenomics on Galaxy Training Network
Interactive Galaxy Tours
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Accessing an interactive Galaxy Tour describing the RNA-seq-to-protein-database workflow: http://z.umn.edu/rnaseqtoproteindbtour
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Accessing an interactive Galaxy Tour describing Dataset Collections: http://z.umn.edu/datasetcollectiontour
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Accessing an interactive Galaxy Tour describing the protein sequence database search workflow: http://z.umn.edu/sequencedbsearchtour
Workflow training and operation
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Instructions on running the RNA-seq-to-protein-database workflow: http://z.umn.edu/rnatoproteindbworkflow
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Instructions on running the protein sequence database search workflow and interpreting results: http://z.umn.edu/sequencedbsearchworkflow
JetStream instance
- Instructions for accessing workflows on the JetStream Galaxy instance: http://z.umn.edu/accessjetstream
The Galaxy-P team collaborates with Galaxy developers around the world including the European Galaxy Community. Users are recommended to use usegalaxy.eu as an alternative server to run your analyses.